PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.201470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YB
Protein Properties Length: 212aa    MW: 23729.8 Da    PI: 8.1881
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.201470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.92.2e-5628123297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk+yl+kyre+e+e
  Cucsa.201470.1  28 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEE 122
                     89*******************************************************************************************98 PP

           NF-YB  97 k 97 
                     k
  Cucsa.201470.1 123 K 123
                     7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.0E-5424131IPR009072Histone-fold
SuperFamilySSF471139.16E-4130132IPR009072Histone-fold
PfamPF008081.8E-273397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.4E-206179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.4E-208098No hitNo description
PRINTSPR006159.4E-2099117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
KRNFMATTAV VSPVGSPTSG NISDSSTKEQ DRFLPIANVS RIMKKSLPAN AKISKEAKET  60
VQECVSEFIS FITGEASDKC QREKRKTING DDLLWAMTTL GFENYVGPLK IYLNKYRETE  120
EEKHSLARQE DPSLSPPKSA AEHIIGGKSA NSVMDFQNFN SGFYSLGNQI QNQGNQKSFN  180
IIDGFMKMEK EIELEPWRLI FNRAPVGDYK F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4828118292Transcription factor HapC (Eurofung)
4g92_B5e-4828118292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149164.11e-134PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotO233105e-63NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A0A0KXV61e-134A0A0A0KXV6_CUCSA; Uncharacterized protein
STRINGPOPTR_0007s06480.16e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-64nuclear factor Y, subunit B3